PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.4530s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 283aa MW: 32496.2 Da PI: 8.6953

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.4530s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.5e-09	94	137	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR ++N++f L+ l+P++ +K++ +i++ + YI++L Araha.4530s0003.1.p 94 FSTERERRVHLNDCFLDLKNLIPNP-----TKNDRESIVQDGIVYINEL 137 678********************.....9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-10	86	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.82E-9	86	142	No hit	No description
SuperFamily	SSF47459	1.16E-12	87	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.141	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-5	94	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-7	94	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MYYLKKNGPI WTEPASENFI SHKSNLFLTI LDVKNGSCLL GVEDQIQMDA NGGVNVMYFQ 60 GANSNNSGGF DNEILEFNNG VTRKGRGSRK SRTFSTERER RVHLNDCFLD LKNLIPNPTK 120 NDRESIVQDG IVYINELRRL VSELKSLVEK KRCGGRHKNI DSRNTIYVTS EIEHPFSKMR 180 LNHDDKNMEK KPESDVIDHC SWLERKSKVI EVYVRVLDDE VTIKVVQKKK IVNCLFFVSK 240 VLDQFHLVIH HVAGGHFGEH YSFLLKTKVS DRVLIMDLNI LD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.4530s0003.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251695	1e-94	AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBank	AK228592	1e-94	AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBank	BT005711	1e-94	BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBank	BT008608	1e-94	BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884716.1	1e-102	transcription factor bHLH138, partial
Swissprot	Q84TK1	3e-81	BH010_ARATH; Transcription factor bHLH10
TrEMBL	D7LD04	1e-102	D7LD04_ARALL; Uncharacterized protein
STRING	scaffold_401648.1	1e-103	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	4e-75	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.4530s0003.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]