PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4536s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 135aa    MW: 15561.1 Da    PI: 10.2591
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4536s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26073.15.4e-235103199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +C  C++++++C++dC++ap fp+++ +kf +++ +FG ++++ +lk+l++ +r+ ++++l++eA+ ++  P +    ++++l +  +q+
  Araha.4536s0001.1.p   5 PCRFCRLKNKQCVNDCMFAPLFPSNDLRKFTIMNFVFGHETLTFFLKDLSPMDRKYTTRTLYFEAKSWLFGPSKDHSDFLNALINYANQT 94 
                          7***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                           ael+++k+
  Araha.4536s0001.1.p  95 PAELSKTKK 103
                          ****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8344105IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-215102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MNPNPCRFCR LKNKQCVNDC MFAPLFPSND LRKFTIMNFV FGHETLTFFL KDLSPMDRKY  60
TTRTLYFEAK SWLFGPSKDH SDFLNALINY ANQTPAELSK TKKLLASYSR PTVVLALPAP  120
RFLWSKTKLS DGHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4536s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001326100.13e-55LOB domain-containing protein 26
RefseqNP_001326101.13e-55LOB domain-containing protein 26
RefseqNP_189433.13e-55LOB domain-containing protein 26
SwissprotQ9LIJ03e-56LBD26_ARATH; LOB domain-containing protein 26
TrEMBLD7LPM62e-84D7LPM6_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50004543e-85(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2101245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27940.11e-58LOB domain-containing protein 26