PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4538s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 98aa    MW: 11021.2 Da    PI: 9.6331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4538s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.8e-091257245
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         g+WT+   + + +a + +  +   +W  +a+ +g g+t +++k ++ 
  Araha.4538s0007.1.p 12 GSWTAKQNKAFEQALATYDQDtpnRWQNVAKVVG-GKTTEEVKRHYE 57
                         89*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.961964IPR017884SANT domain
SMARTSM007171.2E-81062IPR001005SANT/Myb domain
PfamPF002493.3E-71257IPR001005SANT/Myb domain
SuperFamilySSF466894.93E-131268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-51366IPR009057Homeodomain-like
CDDcd001674.82E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASSSMSSHS SGSWTAKQNK AFEQALATYD QDTPNRWQNV AKVVGGKTTE EVKRHYELLV  60
QDINNIENGH VPFPNYRTSG GCTNGREEKR MRNMRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-37797393RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4538s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0503511e-125AL050351.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project).
GenBankAL1615941e-125AL161594.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90.
GenBankAY5195271e-125AY519527.1 Arabidopsis thaliana MYB transcription factor (At4g39250) mRNA, complete cds.
GenBankBT0246501e-125BT024650.1 Arabidopsis thaliana unknown protein (At4g39250) mRNA, complete cds.
GenBankCP0026871e-125CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868895.11e-57protein RADIALIS-like 1
RefseqXP_010437040.11e-57PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB85e-58RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLD7MGD13e-56D7MGD1_ARALL; DNA binding protein
STRINGscaffold_700126.14e-57(Arabidopsis lyrata)
STRINGXP_010437040.15e-57(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-59RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]