PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4581s0001.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family G2-like
Protein Properties Length: 372aa    MW: 41628.3 Da    PI: 5.8033
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4581s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.11.9e-33189243155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++++gLt++hvkSHLQkYR+
  Araha.4581s0001.2.p 189 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNIPGLTIYHVKSHLQKYRT 243
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.943186246IPR017930Myb domain
SuperFamilySSF466899.14E-18187243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-30187245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23189243IPR006447Myb domain, plants
PfamPF002496.8E-11191242IPR001005SANT/Myb domain
PfamPF143795.2E-22277323IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNNPVPCQSV SGGNSGGYLF PSPSGFCNVS AVSPHGRNSQ NQPPLSTVPR ERLAMQDCPL  60
EAQPPLLINH HHQEFTDPLP EFFDFSDHVP VQNLQAESSG VRVDSSVELH KKSEWQEWAD  120
QLISVDDGSE PNWSELLGDS SSHNPNSEIP TPFLDVQRQE IKANQQQQVV SSEDQLSGKN  180
SSSSVATSKQ RMRWTPELHE AFVEAVNQLG GSERATPKAV LKLLNIPGLT IYHVKSHLQK  240
YRTARYKPDT SEVTGEPQEK KMTSIEDIKS LDMKTSVEIT QALRLQMEVQ KRLHEQLEIQ  300
RSLQLQIEKQ GRYLQMMFEK QQKIQENKSS SPEASPKQCN GTSAEVEVGL ETRTVNQNEP  360
ASASRKRVRE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-29189247260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-29189247260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-29189247260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-29189247260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-29189247260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-29189247260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-29189247260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-29189247260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4581s0001.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459430.0AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds.
GenBankAY0851540.0AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence.
GenBankBT0023440.0BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877765.10.0protein PHR1-LIKE 1 isoform X1
RefseqXP_020877766.10.0protein PHR1-LIKE 1 isoform X2
RefseqXP_020877767.10.0protein PHR1-LIKE 1 isoform X2
RefseqXP_020877768.10.0protein PHR1-LIKE 1 isoform X2
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLD7M7060.0D7M706_ARALL; Myb family transcription factor
STRINGfgenesh2_kg.6__2806__AT5G29000.20.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]