PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4583s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 224aa    MW: 25464 Da    PI: 4.7073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4583s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-162868547
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         + +E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++
  Araha.4583s0001.1.p 28 SHDEEQLVIDLHAHLGNK-WSKIASRLP-GRTDNEIKNHWNTH 68
                         789***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.379118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-5417IPR009057Homeodomain-like
SuperFamilySSF466891.03E-20578IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-241873IPR009057Homeodomain-like
PROSITE profilePS5129427.3711973IPR017930Myb domain
SMARTSM007173.8E-142371IPR001005SANT/Myb domain
CDDcd001673.71E-112869No hitNo description
PfamPF002499.2E-152868IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
AGLRRCGKSC RLRWTNYLRP DLKRGLLSHD EEQLVIDLHA HLGNKWSKIA SRLPGRTDNE  60
IKNHWNTHIK KKLLKMGIDP MTHQPLNQEH SNIDNSKTIL SNPEDITMEP KTTNTKDVEI  120
SATTAEDESS STVTDQNNSM DSENHLIDNI YNDDELFSYL WSDETTKAEA SWSDSNFGVG  180
GTLFDNNITG GDADYPIWSP ERINDEKMFL DYCQDFGVHD FGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1957340108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4583s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759930.0AF175993.2 Arabidopsis thaliana putative transcription factor (MYB85) mRNA, complete cds.
GenBankAK1757180.0AK175718.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-25-P15.
GenBankAK1757770.0AK175777.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-35-I17.
GenBankAY5196080.0AY519608.1 Arabidopsis thaliana MYB transcription factor (At4g22680) mRNA, complete cds.
GenBankDQ4468630.0DQ446863.1 Arabidopsis thaliana clone pENTR221-At4g22680 myb family transcription factor (At4g22680) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020873672.11e-145protein ODORANT1
TrEMBLD7ME181e-144D7ME18_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__2034__AT4G22680.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-141myb domain protein 85