PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4647s0008.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 1567aa    MW: 171027 Da    PI: 6.628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4647s0008.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.9e-12783824346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT eE e+++++ +++G++ +k+Ia+++   +t  +c+++++k
  Araha.4647s0008.2.p 783 PWTSEEKEIFLNLLALHGKD-FKKIASYLT-QKTTADCIDYYYK 824
                          8*****************99.********9.9**********98 PP
2Myb_DNA-binding292.5e-099981039447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding    4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47  
                           WT +E   +++++ ++G++ +++I+r++g +R++ qck ++ k+
  Araha.4647s0008.2.p  998 WTDDERSAFIQGFSLFGKN-FASISRYVG-TRSPDQCKVFFSKV 1039
                           *****************99.*********.********998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-14766827IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-7775826IPR009057Homeodomain-like
PROSITE profilePS5129314.571779830IPR017884SANT domain
SMARTSM007174.5E-10780828IPR001005SANT/Myb domain
PfamPF002491.1E-9782824IPR001005SANT/Myb domain
CDDcd001671.97E-8783825No hitNo description
PROSITE profilePS5129313.0399931044IPR017884SANT domain
SMARTSM007174.0E-89941042IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-109971044IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-59971038IPR009057Homeodomain-like
PfamPF002491.3E-79981038IPR001005SANT/Myb domain
CDDcd001674.75E-79981039No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1567 aa     Download sequence    Send to blast
MFDNDYYRPS ASRGDWRYTR NCRDDRVSVS QKEWKCNTWE MSNGSSRSFE RPFGIRNGRR  60
SVDERPLHAS DTHTTVVNSL DPANSTHQPD NEICTPVRSL KFKNEQKFSD QRLSLPSDPH  120
SDCVSLFEQP PSENNYGNKV CSPAKQCNDL MYGRRLANDN SLDPPILNVE LEGTWEQLHL  180
KDPQDNNRLH GISDLDGASK CAKESSLGAT GKLPLWNSSG SFASQSSGFS HSSSLKSLGA  240
VDSSDRKIEV LPKIVTVTQS SSGDATACAT TTHLSEEMSS RKKQRLGWGE GLAKYEKKKV  300
DVNTNEDGTT LLENSSEELH SLNKNIADKS PTAAIVPDYG SPTTPSSVAC SSSPGFADKS  360
SPKAAIAASD VSNMYRSPSP VSSIHLERFP INIEELDNIS MERFGCLLNE LLGTDDPGTG  420
DSSSAQLTSM NRLLAWKGEI LKAVEMTESE IDLLENKHRT LKLEGGRHCR VVQPSSYLCE  480
GDANVPKEQA SCILDPKAAA SSVAETLVRS TVHQAALAKV PVDVSEDNPG AVKSLSQSFA  540
TVKSNEDILP IPSMKAAASS KDHNTPAFAN QETIEVSSAD DSMASNEDLL CAKLLSANKK  600
YACESSGVFD ELLPKDFSSS DNSRFPGICQ TQFDSHVKEK IADRVDLLRA REKILLLQFK  660
AFQLSWKKDL DQLALTKYQS KSSKKTELYP NAKNGGYLKL PQPVRLRFSS SAPRRDSVVP  720
TTELVSYMEK LLPGTHLKPF RDILKMPAMI LDEKERVMSR FISSNGLIED PCDVEKERTM  780
INPWTSEEKE IFLNLLALHG KDFKKIASYL TQKTTADCID YYYKNHKSDC FGKIKKQRAY  840
GKEGKHTYML APRKKWKREM GAASLDILGD VSIIAANAGK VASTRLISSK KITLRGCSSA  900
NSLQNDGNNS EGCSYSFDFP RKRTAGADVL AVGPLSSEQI NSCLRTSVSS RERCMDHLKF  960
NHVVKKPRIS HTLHNENSNE EDDSCSEESC GETGPIHWTD DERSAFIQGF SLFGKNFASI  1020
SRYVGTRSPD QCKVFFSKVR KCLGLEFIQS GSGNVSTSVS VDNGNEGGGS DLEDPCPMES  1080
NSGICDNGVC AKMGMNSPTS PFNMNRDGAN YSGSANGKAD LSRSEQENGQ TYLCVKDDNN  1140
LVNNAYINGG FPSLVSETCR DLVDINTVES QSQAAGKSKS NDLMSMEIDE GVLTSVAVSS  1200
EPLYCGLSVL SNVIVETPTE ISRKGSGDQG AAIPKLSSKN QDEVMQAANR TRNSGLEPES  1260
APSGFRYPEC LHHVPIEVCT ENPIGVSVPR GNPNCHAESE SGNSLVGKVV ETHDLGWQSS  1320
KNNLELDGRL RVLGHVNPEQ NGQLNATNAG SCQIPQRVVT QDLSRISRSK SDLIVKTQRT  1380
GEGFTLNKCT SSAPKPLAVF HKEGRSGHSR SHSFSLSDTE RLDKNGDVKL FGTVLTADEN  1440
GIKQKHNPCG IVRSSSALSR DHDTRHHYIN QQHLQNVPIT SYGFWDGNRI QTGLTSLPES  1500
AKLLASCPEA FSTHLKQQVG NSKEILLDVH GGVLSFGKHN EDRAESSSAK DEGNIGGVNG  1560
VAEAAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C2e-15741831493NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D2e-15741831493NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4647s0008.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF5469830.0HF546983.1 Arabis alpina myb gene for myb like transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876132.10.0uncharacterized protein LOC9313919
RefseqXP_020879656.10.0uncharacterized protein LOC9313919
TrEMBLD7LU400.0D7LU40_ARALL; Myb family transcription factor
STRINGscaffold_502292.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein