PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.4685s0006.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 215aa MW: 24198.4 Da PI: 4.9491

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.4685s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.3	1.1e-09	8	49	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ien + r+ +f kR+ ++K E +LCd++++ +i+s+ + Araha.4685s0006.1.p 8 IENGTSRKKSFNKRKPELMKELTEPVTLCDVKACAVIYSPYN 49 9**************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.054	1	46	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.01E-13	2	57	No hit	No description
SMART	SM00432	3.0E-5	2	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-13	2	93	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-10	8	49	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MKKKLSLIEN GTSRKKSFNK RKPELMKELT EPVTLCDVKA CAVIYSPYNS NREALPSREC 60 VEEVVSEEFM EVSRNDRNKS MMDQEALLRE RIEKEQMELK KLRDENRDLR AREIMWGCLG 120 GNIDVHQLGE KDLQDLSSVI DNYLNSVTSR IEILKKNGES SSSLPPLVVP DLNVEEDGTI 180 LSMDGSHHQS ETTRLATITT TATDACAPNI TNNP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of gametophytes and seeds.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.4685s0006.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by MEA in seeds, and by PKL after germination. {ECO:0000269\|PubMed:12815071, ECO:0000269\|PubMed:16359393}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB830643	0.0	AB830643.1 Arabidopsis halleri subsp. gemmifera PHE2 gene for pheres2, partial cds, isolate: e011.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_176201.1	6e-71	MADS-box family protein
Refseq	XP_010513520.1	1e-70	PREDICTED: MADS-box transcription factor PHERES 2-like
Swissprot	Q7XJK8	3e-61	PHE2_ARATH; MADS-box transcription factor PHERES 2
TrEMBL	S6C653	1e-151	S6C653_ARAHG; Pheres2 (Fragment)
STRING	scaffold_201366.1	1e-108	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65300.1	3e-49	AGAMOUS-like 38

Link Out ? help Back to Top
Phytozome	Araha.4685s0006.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]