PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4729s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 861aa    MW: 97059.5 Da    PI: 6.4493
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4729s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.63.6e-1263134190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY+eY++++GF+ +       +++g++  r+fvCs + ++++  +              +C+a+l++++++++kw+vtk+++eH+H l+
  Araha.4729s0006.1.p  63 SFYDEYSRQLGFTSKLLP----RTDGSVSVREFVCSSKRSKRRLAE--------------SCDAMLRIELQDHDKWVVTKFVKEHTHGLV 134
                          5***********988875....55899********98877666554..............5**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-764134IPR004330FAR1 DNA binding domain
PfamPF105511.0E-23256347IPR018289MULE transposase domain
PROSITE profilePS5096610.608534570IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-9539568IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-8545572IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MDIHLVEEGV SMGNHVIGDE GDAEPSDCSG LNNIENSLGV QDEIGIAEPC LGMEFSSENE  60
AKSFYDEYSR QLGFTSKLLP RTDGSVSVRE FVCSSKRSKR RLAESCDAML RIELQDHDKW  120
VVTKFVKEHT HGLVSSNTLH CLRPRRHFAN SEKSNYQQGV NVPSGTMYVS MDANSRGARS  180
ASKDSNRGVN YGSMATNTKR TIGRDAHNLL EYFKRMQAEN PGFFYAIQLD EDNQMANVFW  240
ADSRSRIAYT HFGDTVTLDT RYRCNQFRVP FAPFTGVNHH GQTILFGCAL ILDESDTSFI  300
WLFKTFLTAM RDQPPVSLVT DQDRAIQIAV AQVFPGARHC INKWDVLREG QEKLAHVCLA  360
YPSFQVELYN CINFTETIDE FESSWSSIIE KYDLGRHEWL NSLYNARAQW VPVYFRDSFF  420
AAVFPSQGYS GSFFDGYVNQ QTTLPMFFRL YERAMESWFE MEIEADLDTV NTPPVLKTPS  480
PMENQAANIF TRKIFGKFQE ELVETFAHTA NRIEDDGTTS TFRVANFEND NKAYIVTFCY  540
PEMRANCSCQ MFEHSGILCR HVLTVFTVTN ILTLPAHYIL RRWTRNAKSM VELDEHVSEN  600
GHDSLIHRYN HLCREAIKYA EEGAISAEAY SIALGGLREG GKKVSVVRKN IGRAAPLSSH  660
GGGIGSGDKT SLSAADTTPL LWPRQDEMIR RFNLNNGGAR AQSVADLNLP RMAPVSLHRD  720
DGAPENMVAL PCLKSMTWGM ESKNTMPGGR VAVINLKLHD YRKFPSADMD VKFQLSSVTL  780
EPMLRSMAYI SEQLSSPANR VAVINLKLQD TETTTGESEV KFQVSRDTLG AMLRSMAYIR  840
EQLSIVGELH TEPQAKKQRK *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4729s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3173500.0AK317350.1 Arabidopsis thaliana AT2G27110 mRNA, complete cds, clone: RAFL24-16-J02.
GenBankAY0574910.0AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds.
GenBankBT0026900.0BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020883133.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_020883134.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_020883135.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLR0HMV50.0R0HMV5_9BRAS; Uncharacterized protein
STRINGCagra.5679s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]