PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4747s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 162aa    MW: 17859.3 Da    PI: 10.4747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4747s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-2077132155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+WvAeIr+    g    +r r +lg+f taeeAa a+++a+ +l g
  Araha.4747s0009.1.p  77 KKFRGVRQRP-WGKWVAEIRCGG--GackgRRGRLWLGTFNTAEEAALAYDNAAIQLIG 132
                          59********.**********53..3555556**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.5E-351159IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.25E-2477139No hitNo description
PfamPF008475.4E-1478132IPR001471AP2/ERF domain
SMARTSM003806.3E-3078146IPR001471AP2/ERF domain
PROSITE profilePS5103220.8978140IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-1978140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-2778139IPR001471AP2/ERF domain
PRINTSPR003675.4E-117990IPR001471AP2/ERF domain
PRINTSPR003675.4E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKRIIRISFT DAEATDSSSD EDTEERGGAS QTRRRGKRLV KEIVIDPSDK LDVCKTRFKI  60
RIPAEFLKTA SENVRKKKFR GVRQRPWGKW VAEIRCGGGA CKGRRGRLWL GTFNTAEEAA  120
LAYDNAAIQL IGPHAPTNFG FPAENHEDKT VVGASDVARG A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1577139159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1577139462ATERF1
3gcc_A3e-1577139462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4747s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0169721e-170AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBankAK1755781e-170AK175578.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-02-J01.
GenBankAK1756831e-170AK175683.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-20-F22.
GenBankAK1757401e-170AK175740.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-28-P11.
GenBankAK1757741e-170AK175774.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-34-K21.
GenBankAK1759311e-170AK175931.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-60-G16.
GenBankAK1760431e-170AK176043.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-78-J24.
GenBankAK1761441e-170AK176144.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-96-F12.
GenBankAK1762801e-170AK176280.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-20-P21.
GenBankAY0859101e-170AY085910.1 Arabidopsis thaliana clone 19578 mRNA, complete sequence.
GenBankBT0256181e-170BT025618.1 Arabidopsis thaliana At1g71130 mRNA, complete cds.
GenBankCP0026841e-170CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020865801.11e-109ethylene-responsive transcription factor ERF070
SwissprotQ9C9951e-101ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLD7KYJ01e-102D7KYJ0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1375__AT1G71130.11e-103(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.13e-69ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]