PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.4747s0013.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 234aa MW: 26289.9 Da PI: 7.8772

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.4747s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.4e-11	62	116	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ hn+ Er RR r+ ++ +L +llP s+ ++kK s +i ++ YI +Lq Araha.4747s0013.1.p 62 KKQDHNAKERLRRMRLHASYLTLGTLLPDHSSSSKKKWSAPSIIDNVITYIPKLQ 116 6899***********************87889999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-12	57	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.43	61	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.48E-4	61	119	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-10	61	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-7	62	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-6	67	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSSQPNHQTS ISSLLHDRLH IPPAETIVEK DSADKDTCQS QRKRKEPVLH EVVDGSSSGA 60 SKKQDHNAKE RLRRMRLHAS YLTLGTLLPD HSSSSKKKWS APSIIDNVIT YIPKLQNEVG 120 ELTLRKQKLV ELERRGPSIR AISVLELGES GYEAVVQICL KKENEDEFSN LLHVMELQGL 180 SILSASTSQV CREQRVVCYN FHVKMDEKPC EGDDYITVLK NNIISSLRDN TKC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.4747s0013.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016162	1e-149	AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBank	AC016972	1e-149	AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBank	CP002684	1e-149	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001322926.1	1e-158	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	F4I8F9	1e-159	BH160_ARATH; Transcription factor bHLH160
TrEMBL	A0A1P8AVG1	1e-156	A0A1P8AVG1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	AT1G71200.1	1e-157	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-160	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.4747s0013.1.p

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]