PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4747s0020.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Whirly
Protein Properties Length: 184aa    MW: 20345.3 Da    PI: 9.6585
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4747s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly233.71.3e-7241421139
               Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 
                          +++k+kaal+v++v+ptf+++dsgnl+++r+G+l++++++a++erkydWekkq+fals+tev++l++++sk+s+effhdp++k+sn+G+v
  Araha.4747s0020.1.p   4 AIFKGKAALSVEPVLPTFTEIDSGNLRIDRRGSLMMTFMPAIGERKYDWEKKQKFALSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQV 93 
                          59**************************************************************************************** PP

               Whirly  91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                          rk+l+++P++dGsG+f++lsv+ns++k+n++f+vPv+kaefav++++++
  Araha.4747s0020.1.p  94 RKSLSIKPHADGSGYFISLSVNNSILKTNDYFVVPVTKAEFAVMKTAFS 142
                          **********************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544472.12E-732183IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.101.5E-722158IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-615139IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
APYAIFKGKA ALSVEPVLPT FTEIDSGNLR IDRRGSLMMT FMPAIGERKY DWEKKQKFAL  60
SPTEVGSLIS MGSKDSSEFF HDPSMKSSNA GQVRKSLSIK PHADGSGYFI SLSVNNSILK  120
TNDYFVVPVT KAEFAVMKTA FSFALPHIMG WNRLTGQGNT EALPPRNLTH LKTDPQLELE  180
WDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-112115713169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-112115713169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-112115713169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-112115713169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4747s0020.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721100.0AY072110.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds.
GenBankAY1229610.0AY122961.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889865.11e-132single-stranded DNA-binding protein WHY2, mitochondrial isoform X2
SwissprotQ8VYF71e-129WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLD7KYT21e-130D7KYT2_ARALL; ATWHY2
STRINGscaffold_202038.11e-131(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-131WHIRLY 2