PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4808s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 365aa    MW: 42118.1 Da    PI: 7.8372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4808s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.39.8e-0923511543
                         HHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsst 43
                         k r  ++KK +EL +LC++++++i+fs++
  Araha.4808s0003.1.p 23 KIRVWLMKKVKELTILCAVRACMIMFSPN 51
                         556669*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-9160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.362151IPR002100Transcription factor, MADS-box
CDDcd002663.66E-18482No hitNo description
SuperFamilySSF554551.7E-15495IPR002100Transcription factor, MADS-box
PfamPF003198.2E-101152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVVNKIKLAW VENEKSRAKK MKKIRVWLMK KVKELTILCA VRACMIMFSP NDVEPMVWPS  60
VEKAHDLLDG FFALPEIEKK KKEISLQTYL KEKTKKVREQ FMKTQKKHMD YVTDQLMEEL  120
HRGRRIDDLS LSEINALISF SRDNIILHRK ELEFVQHSPL RDPPVPPFEV QFEELPATAN  180
DVIIRGGQVD ERTWKNYEET KRFSIGNALR GNQSHYLVDK WVFASPEPPK PRTSQPIEMD  240
LVSYNKNPNH VLYEGSSRNE NSYLDIEQVR APVMTYHGLV GSVSHQLQHR IINTPTMDTS  300
EPRQHPFDFM GRELGVKEEG SNVNNGDSQF HERSNTRAVN DSIRQEPPHN GTTIGEINGG  360
EGMM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4808s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062480.0AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887803.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC110230145
TrEMBLQ9ZQE81e-157Q9ZQE8_ARATH; Uncharacterized protein At2g15660
STRINGBostr.18351s0040.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-104AGAMOUS-like 48