PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.48140s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18285.4 Da    PI: 10.1671
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.48140s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21.1e-13957149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          krien++ r+ tf + r  i+KKA  L  LC +ev v+++s+t+  y+y
  Araha.48140s0001.1.p  9 KRIENSIERKATFLRLRDDIFKKADALAKLCHVEVDVLVISPTNVPYTY 57
                          79******************************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.474161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-12160IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-18386IPR002100Transcription factor, MADS-box
PfamPF003193.0E-141057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGPRKIEIKR IENSIERKAT FLRLRDDIFK KADALAKLCH VEVDVLVISP TNVPYTYGNL  60
CFNDVVEHIQ NPSASSKIVS LMKELECIKE LEEVWTKRQQ RNHEKSNMKG IVDLKVEDLV  120
ALKGKLEAFQ VGLKRKIVAI EDLSSPSMVS KKTKKRRQGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150157KKTKKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.48140s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891383.11e-107MADS-box transcription factor 27
TrEMBLD7KBW31e-105D7KBW3_ARALL; Uncharacterized protein
STRINGscaffold_104367.11e-106(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.11e-77AGAMOUS-like 102