PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.48233s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 134aa    MW: 15572.3 Da    PI: 4.3616
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.48233s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.7e-19998198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                          ffk +   +  +s+ l +p  f e++    + + t+ l d +grsW+v++  +k+++ ++lt GW++Fvk+n+L++g  + F +d++++f 
  Araha.48233s0001.1.p  9 FFKPF--ISQKSSKSLAIPLGFEEHFP--APLPLTVDLLDYNGRSWTVRV--KKRGENVFLTVGWENFVKDNNLEDGKHLNFIYDRQRTF- 92
                          78888..455556669******65555..44899****************..*******************************9986666. PP

                          .EEEEE- CS
                    B3 92 lvvkvfr 98
                           +v +f 
  Araha.48233s0001.1.p 93 -YVIIFG 98
                          .888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-244102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-226102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.5087100IPR003340B3 DNA binding domain
PfamPF023623.4E-17997IPR003340B3 DNA binding domain
SMARTSM010194.9E-209100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MADTGEVRFF KPFISQKSSK SLAIPLGFEE HFPAPLPLTV DLLDYNGRSW TVRVKKRGEN  60
VFLTVGWENF VKDNNLEDGK HLNFIYDRQR TFYVIIFGHD MCSEFRSFPQ VVVEVDDYEN  120
GEEVDEEEQE NNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-6211023104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.48233s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934601e-130AB493460.1 Arabidopsis thaliana At1g16640 mRNA for hypothetical protein, partial cds, clone: RAAt1g16640.
GenBankBT0125111e-130BT012511.1 Arabidopsis thaliana At1g16640 gene, complete cds.
GenBankBT0148111e-130BT014811.1 Arabidopsis thaliana At1g16640 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890178.18e-86B3 domain-containing protein At1g16640
SwissprotQ9FX771e-69Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLD7KEH62e-84D7KEH6_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_10014183e-85(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.13e-69B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]