PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4847s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 375aa    MW: 42365.7 Da    PI: 8.6391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4847s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07212234123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++Cgk F+r  nL+ H+r H
  Araha.4847s0003.1.p 212 HYCQICGKGFKRDANLRMHMRAH 234
                          68*******************99 PP
2zf-C2H211.80.00074333348621
                          TTEEESSHHHHHHHHH CS
              zf-C2H2   6 CgksFsrksnLkrHir 21 
                          Cg+ Fsrk+ L++H +
  Araha.4847s0003.1.p 333 CGTKFSRKDKLMSHVS 348
                          **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-6210237No hitNo description
Gene3DG3DSA:3.30.160.603.2E-6212239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
SMARTSM00355160263296IPR015880Zinc finger, C2H2-like
SMARTSM0035573301323IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMNRDEHITN KGEGSMPSFS GTTSTSSKQI FVNPVTTAGT KSLEEDDVSL SLLYNLSTLQ  60
DKVHQIQSLV SFYMISTNNI NQSSGSTSLA VANIGSLVQE IITAASSMLY TCQQLHIGSN  120
NSNDIDNDHT VDAMVLEFSR QETDPGHDFV QESTNLFGVQ ERGQVSFPNQ NYDWYDTQTL  180
NPKKDKHRSK PKSGNYEILE LDVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT  240
REALISPTSQ EKKGDYTLKK HYYSCPQQGC RWNQRHEKFQ PLKSVICAKN HYKRSHCPKM  300
YMCRRCSVKH FSVLSDLRTH EKHCGDIKWV CSCGTKFSRK DKLMSHVSLF LGHVPAHGSS  360
QPPGANNNHT KVRL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4847s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052430.0AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17.
GenBankAK2277400.0AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874102.10.0zinc finger protein STOP1 homolog
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLD7M1K60.0D7M1K6_ARALL; Zinc finger family protein
STRINGfgenesh1_pm.C_scaffold_60018050.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.10.0C2H2 family protein