PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4848s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 636aa    MW: 73155.1 Da    PI: 5.6929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4848s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.61.2e-1072556322373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsets.eknsseelaalklfsevsP 89 
                          ++lL++cA+a+s+gd++ a  +L ++++++sp gd+ qRla++f++AL+arl++s+  + ++  ++ +ts +++ +++l+a++++   sP
  Araha.4848s0003.1.p 255 RTLLTHCAQAISTGDKTTALDFLLQIRQQSSPLGDAGQRLAHCFANALEARLQGSTGPMIQIYyNAITTSlKDTATDTLKAYRVYLSSSP 344
                          689***************************************************877777666444444404459*************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                          ++++ ++   ++Il+ ++ ++ +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe
  Araha.4848s0003.1.p 345 FVTLMYFFSIRMILDVAKDASVLHIVDFGILYGFQWPMFIQYISGRNDVPRKLRITGIELPQCGfrPAERIEETGRRLAEYCKRFNVPFE 434
                          **************************************************************9999************************ PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          +++++++++e++++e+L+++p+E+laVn  l+l++l de++s e+ +rd+vLkl+++++P+v++++  + + n++ F  rf ea+++ysa
  Araha.4848s0003.1.p 435 YKAIASQNWETIRIEDLDIRPNEVLAVNAGLRLKNLQDETGSEENcPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSA 524
                          ****999**************************************99******************************************* PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                          lfd+++++lpr+++eri  Ere+ gre++nv+ace+a+r+er et+++W+ r+ +aGFk+ +++ + ++  +  l+k    + + v+e+s
  Araha.4848s0003.1.p 525 LFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKSIKPELVELFREKLKKWRyHKDFVVDENS 614
                          ****************************************************************************9998999******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaW 373
                          ++l++gWk+r+L++ S+W
  Araha.4848s0003.1.p 615 KWLLQGWKGRTLYASSCW 632
                          ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.863228612IPR005202Transcription factor GRAS
PfamPF035144.2E-105255632IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MDPNFSESLN SFEYFDGNPN FLTDPMEDQY PPPSDTLLKY VSEILMEESN GDYKQSMFYD  60
SLALRKTEEM LKQVITDSQN QSFSPDSMIT NSWDASGSIE SAYSADPQIG LPVDEFMVKS  120
VFSDAESAIQ FKKGVEEASK FLPNSDQWVI NLDIERPGKR GLVKEEMGLD QLRGKKNHER  180
EILDFEEVRS SKQFASNVED GKITEMFDKV LLLDGECDPQ TLLDSEIQAI RSNKNRGEKG  240
KKKKKKKKSQ VVDFRTLLTH CAQAISTGDK TTALDFLLQI RQQSSPLGDA GQRLAHCFAN  300
ALEARLQGST GPMIQIYYNA ITTSLKDTAT DTLKAYRVYL SSSPFVTLMY FFSIRMILDV  360
AKDASVLHIV DFGILYGFQW PMFIQYISGR NDVPRKLRIT GIELPQCGFR PAERIEETGR  420
RLAEYCKRFN VPFEYKAIAS QNWETIRIED LDIRPNEVLA VNAGLRLKNL QDETGSEENC  480
PRDAVLKLIR NMNPDVFIHA IVNGSFNAPF FISRFKEAVY HYSALFDMFD STLPRDNKER  540
IRFEREFYGR EAMNVIACEE ADRVERPETY RQWQVRMVRA GFKQKSIKPE LVELFREKLK  600
KWRYHKDFVV DENSKWLLQG WKGRTLYASS CWVST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-412586328374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4848s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885296.10.0scarecrow-like protein 34
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLD7LKB70.0D7LKB7_ARALL; Scarecrow transcription factor family protein
STRINGscaffold_401365.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein