PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4860s0013.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 517aa    MW: 57309.4 Da    PI: 6.9891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4860s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-1583129148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+ Ede l +av  + g++Wk Ia+ ++  Rt+ qc +rwqk+l
  Araha.4860s0013.1.p  83 KGGWTPAEDETLRRAVGTYKGKSWKNIAKFFP-DRTEVQCLHRWQKVL 129
                          688*****************************.************986 PP
2Myb_DNA-binding636e-20135181148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEde++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  Araha.4860s0013.1.p 135 KGPWTQEEDEKIVELVEKYGPAKWSVIAQSLP-GRIGKQCRERWHNHL 181
                          79******************************.*************97 PP
3Myb_DNA-binding53.46.1e-17187230146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Araha.4860s0013.1.p 187 KDAWTSEEEVALMNAHRSHGNK-WAEIAKVLP-GRTDNAIKNHWNS 230
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.28478129IPR017930Myb domain
SMARTSM007179.1E-1482131IPR001005SANT/Myb domain
PfamPF002495.8E-1483129IPR001005SANT/Myb domain
SuperFamilySSF466892.8E-1584139IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2085139IPR009057Homeodomain-like
CDDcd001671.75E-1286129No hitNo description
PROSITE profilePS5129431.851130185IPR017930Myb domain
SuperFamilySSF466892.51E-32132228IPR009057Homeodomain-like
SMARTSM007172.4E-18134183IPR001005SANT/Myb domain
PfamPF002491.3E-18135181IPR001005SANT/Myb domain
CDDcd001673.25E-16137181No hitNo description
Gene3DG3DSA:1.10.10.605.7E-28140188IPR009057Homeodomain-like
SMARTSM007171.5E-15186234IPR001005SANT/Myb domain
PROSITE profilePS5129421.707186236IPR017930Myb domain
PfamPF002494.9E-15187230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-23189235IPR009057Homeodomain-like
CDDcd001675.31E-12189232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MSSTLNPAAS SPDEMDLQEE AGEVKIEDQC VENKQSTPAS CSSVSEGSAG SSHKSPTIAS  60
PPATVSPTHR YLGRTSGPIR RAKGGWTPAE DETLRRAVGT YKGKSWKNIA KFFPDRTEVQ  120
CLHRWQKVLN PDLIKGPWTQ EEDEKIVELV EKYGPAKWSV IAQSLPGRIG KQCRERWHNH  180
LNPDINKDAW TSEEEVALMN AHRSHGNKWA EIAKVLPGRT DNAIKNHWNS SLKKKSEFYS  240
MTGRLPPPTT AKNGVPDSVT KRSSSSQKRV FGSVTQTSSG TTDKNNPDED RNGQINSTVP  300
VEEVVAASRM TGVNEYARSP QLPNPEPLPE NGGAANNGYH LYYTPQIEYY MASEADTQRM  360
YGYECGCSPS ASPVSFFTPP PCRNAYSNGS TPRSPESYLR EAARTYPNTP SIFRKRRPRV  420
VVEDNNNAEK TDEAKEVDQK VNDGKDSSES PNCEEIQKNG SNAYNLSPPY RIRSKRTAVF  480
KSRQLEFISA EEEKADDETK SSEKDMLIDG DSQLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-70822355158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-70822355158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4860s0013.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1426490.0AY142649.1 Arabidopsis thaliana putative MYB family transcription factor (At3g09370) mRNA, complete cds.
GenBankAY5196510.0AY519651.1 Arabidopsis thaliana MYB transcription factor (At3g09370) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887312.10.0transcription factor MYB3R-3
SwissprotQ8H1P90.0MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLD7L7U30.0D7L7U3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30008390.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.20.0myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]