PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4954s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 291aa    MW: 31530.5 Da    PI: 8.949
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4954s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032184206123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Araha.4954s0008.1.p 184 YQCKTCDRTFPSFQALGGHRASH 206
                          9***********99999998887 PP
2zf-C2H213.50.00021263285123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Araha.4954s0008.1.p 263 HECGICGAEFTSGQALGGHMRRH 285
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.44E-9183206No hitNo description
PfamPF139121.6E-12183208IPR007087Zinc finger, C2H2
SMARTSM003550.028184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471184211IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SuperFamilySSF576676.44E-9258285No hitNo description
Gene3DG3DSA:3.30.160.605.5E-4261287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.7E-11262287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93263287IPR007087Zinc finger, C2H2
SMARTSM003550.047263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS  60
LNDEINNNNN KNDNNTLING VTSSSSASSS SNNNATLKAT ADEEDQDMAN CLILLAQGHS  120
LPHHQPQPHP QQQTRQLMIS YQESGNNNNN NNAYRSSSRR FLETSSSNGT TTNGGGGRAG  180
YYVYQCKTCD RTFPSFQALG GHRASHKKPK AATGLHSNHD HKKSIYDDAV SLHLNNVITT  240
TPNNNSNHRS LVAYGKASNN KVHECGICGA EFTSGQALGG HMRRHRGAVV A
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4954s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936080.0AB493608.1 Arabidopsis thaliana At3g10470 mRNA for hypothetical protein, partial cds, clone: RAAt3g10470.
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484714.11e-161PREDICTED: zinc finger protein ZAT5-like
TrEMBLD7L8Z41e-154D7L8Z4_ARALL; Uncharacterized protein
STRINGXP_010484714.11e-160(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-116C2H2 family protein