PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.49796s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 340aa    MW: 37929.4 Da    PI: 8.9173
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.49796s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-131571155
                   AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                          s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Araha.49796s0001.1.p 15 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 71
                          57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-151580IPR016177DNA-binding domain
PfamPF008474.3E-91571IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-121680IPR001471AP2/ERF domain
SMARTSM003805.3E-191685IPR001471AP2/ERF domain
PROSITE profilePS5103218.5181679IPR001471AP2/ERF domain
PRINTSPR003672.9E-51728IPR001471AP2/ERF domain
PRINTSPR003672.9E-56181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
RISKMPPCTA GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQG AYDDEEAAAR  60
AYDLAALKYW GPGTLINFPV TDYTRDLEEM QNLSREEYLA SLRRKSSGFS RGIAKYRGLQ  120
SRWDASASRM PGPEYFSNIH YGAGDDRGTE GDFLGSFCLE RKIDLTGYIK WWGANKTRQP  180
ESSSKASEDA NVEDAGTELK TLEHTSQATE PYKAPNLGVL RGTQRKEKEI SSPSSSSALS  240
ILSQSPAFKS LEEKVLKIQE SCNNENDENA NRNIINMEKN HGKAIEKPVV SHGVALGGAA  300
VLSLQKSMYP LTSLLTAPLL TNYNTLDPLA DPILWTPFLP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.49796s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259850.0BT025985.1 Arabidopsis thaliana At2g41710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884200.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A178VUE70.0A0A178VUE7_ARATH; Uncharacterized protein
STRINGBostr.11568s0008.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein