PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.51150s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 216aa MW: 24840.7 Da PI: 5.4009

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.51150s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.8	1.4e-16	2	74	18	95
--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +p +f+ +h + ++e++t l++ s +Wevk+ +++s+r lt+GWkeF+ a++ ++gD++vF++dg+ f +v+ Araha.51150s0001.1.p 2 IPVTFFLKHVERSNEQRTANLRSdASDTTWEVKI--DGRSRR--LTGGWKEFATAHDFRVGDIIVFRHDGDLVF--HVT 74 899999656667789999987889****..99..9********************8886555..555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.535	1	79	IPR003340	B3 DNA binding domain
CDD	cd10017	1.32E-12	2	74	No hit	No description
Pfam	PF02362	2.5E-11	2	69	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.22E-17	2	85	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.5E-9	2	79	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.8E-19	2	89	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-8	151	213	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.63E-8	153	216	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.318	157	216	IPR003340	B3 DNA binding domain
CDD	cd10017	1.25E-9	157	216	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
NIPVTFFLKH VERSNEQRTA NLRSDASDTT WEVKIDGRSR RLTGGWKEFA TAHDFRVGDI 60 IVFRHDGDLV FHVTALGPSC CEIQYVQSCN DDDNLDDDQE DIRNLPMEQS LKTELEAEPS 120 LDDDDEDDNM GKLLRKKHVN KRIPETEAKC FSSDQSCFVA HVTDSNLRKD SLSLPRKFVR 180 TDGLNKGTNK IVLVNEGART WTLILKFRDS RRSFYM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.51150s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ515263	1e-81	AJ515263.1 Arabidopsis thaliana mRNA for putative auxin response factor 25 (arf25 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872309.1	1e-124	LOW QUALITY PROTEIN: B3 domain-containing protein REM7
Swissprot	Q8H2D0	1e-105	REM7_ARATH; B3 domain-containing protein REM7
TrEMBL	D7MB43	1e-118	D7MB43_ARALL; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_7000788	1e-119	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31660.1	1e-102	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.51150s0001.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]