PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5127s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 281aa    MW: 31901.8 Da    PI: 9.3714
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5127s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.7e-27170223155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gL++e+v+SHLQk+R+
  Araha.5127s0001.1.p 170 KSRVVWSIELHQQFVNAVNKL-GIDKAVPKRILELMNVPGLSRENVASHLQKFRM 223
                          68*******************.********************************8 PP
2Response_reg59.51.8e-2079423109
                          CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          y +v+ +++++ al++l+e++  +Dl+l D+ mpgm+G++ll++    e +lp+i+++  g  +++   ++ Ga d+l Kp+ peel +
  Araha.5127s0001.1.p   7 Y-QVTICSQADVALTILRERKdcFDLVLSDVHMPGMNGYKLLQQVGLLELDLPVIMMSVDGRTATVMTGINHGACDYLIKPIRPEELKN 94 
                          6.89999**********99999****************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.7E-1271278IPR017053Response regulator B-type, plant
CDDcd001562.88E-21199No hitNo description
SMARTSM004481.9E-10196IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.7E-321121No hitNo description
PROSITE profilePS5011034.0321100IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.13E-262116IPR011006CheY-like superfamily
PfamPF000723.2E-17794IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129411.101167229IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-28167228IPR009057Homeodomain-like
SuperFamilySSF466891.11E-18168227IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-24170223IPR006447Myb domain, plants
PfamPF002497.3E-7172221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLLRLMYQVT ICSQADVALT ILRERKDCFD LVLSDVHMPG MNGYKLLQQV GLLELDLPVI  60
MMSVDGRTAT VMTGINHGAC DYLIKPIRPE ELKNIWQHVV RRKCVMKKEL RNSQALEDNK  120
NSGSLETVFS ASECSEGSLM KRRKKKKKRS VDREDNEDDL DLLNPGNSKK SRVVWSIELH  180
QQFVNAVNKL GIDKAVPKRI LELMNVPGLS RENVASHLQK FRMYLKRLSG EASQNNDTES  240
IKRYENIQAL VSSGQLHPQT LAALYGQTID NHHSASFGVW I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-20169229464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146LMKRRKKKK
2140148KRRKKKKKR
3141147RRKKKKK
4142148RKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5127s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881490.0AY088149.1 Arabidopsis thaliana clone 41875 mRNA, complete sequence.
GenBankAY0997260.0AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288870.0AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875093.10.0two-component response regulator ARR14 isoform X2
SwissprotQ8L9Y31e-176ARR14_ARATH; Two-component response regulator ARR14
TrEMBLD7LPV70.0D7LPV7_ARALL; Two-component response regulator
STRINGscaffold_500093.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-165response regulator 14