PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.52008s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 169aa    MW: 18380.7 Da    PI: 8.8954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.52008s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.5e-195196147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W+teEd  l ++v++lG ++W++Iar ++ gR++k+c++rw + 
  Araha.52008s0001.1.p 51 KGPWSTEEDAVLTKLVRKLGARNWSLIARGIP-GRSGKSCRLRWCNQ 96
                          79******************************.***********985 PP
2Myb_DNA-binding50.16.2e-16103147147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r++++ eEd  ++ a++ +G++ W+ Ia+++  gRt++ +k++w++ 
  Araha.52008s0001.1.p 103 RKPFSDEEDRMIISAHAVHGNK-WAVIAKMLT-GRTDNAIKNHWNST 147
                           789*******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.29746101IPR017930Myb domain
SuperFamilySSF466895.75E-3148144IPR009057Homeodomain-like
SMARTSM007175.0E-155099IPR001005SANT/Myb domain
PfamPF002492.2E-175196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2652104IPR009057Homeodomain-like
CDDcd001671.61E-135395No hitNo description
PROSITE profilePS5129420.339102152IPR017930Myb domain
SMARTSM007171.8E-15102150IPR001005SANT/Myb domain
PfamPF002491.7E-14103147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-23105151IPR009057Homeodomain-like
CDDcd001676.73E-11105148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEGETNQSEP LPFASADSDE GISASIEAEL AELAAGDSSG GGGGGIKSKV KGPWSTEEDA  60
VLTKLVRKLG ARNWSLIARG IPGRSGKSCR LRWCNQLDPC LKRKPFSDEE DRMIISAHAV  120
HGNKWAVIAK MLTGRTDNAI KNHWNSTLRR KYADLWNNGQ WMANSVTTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-41451511107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.52008s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2627340.0AF262734.2 Arabidopsis thaliana putative transcription factor MYB109 (MYB109) mRNA, complete cds.
GenBankAY1363250.0AY136325.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
GenBankAY5196000.0AY519600.1 Arabidopsis thaliana MYB transcription factor (At3g55730) mRNA, complete cds.
GenBankBT0000920.0BT000092.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191132.11e-108myb domain protein 109
SwissprotO041922e-65MYB25_ARATH; Transcription factor MYB25
TrEMBLA0A384L0A41e-106A0A384L0A4_ARATH; MYB109
TrEMBLQ6R0801e-106Q6R080_ARATH; MYB transcription factor
TrEMBLQ9LDW51e-106Q9LDW5_ARATH; MYB transcription factor-like protein
STRINGAT3G55730.11e-107(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-89myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]