PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.52471s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 69aa    MW: 7973.11 Da    PI: 4.8792
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.52471s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS63.73.7e-20168309374
                  GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                           +e++e+Wr  +e+aGF++v+ls++a++qak ll +++ s+ y++ e++  ++ l W+d pL+++S+Wr
  Araha.52471s0001.1.p   1 MEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNySNLYSIVESKPGFIsLAWNDLPLLTLSSWR 68 
                           5899*********************************99********999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.2E-17168IPR005202Transcription factor GRAS
PROSITE profilePS5098510.147146IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MEEKEQWRVL MENAGFESVK LSNYAVSQAK ILLWNYNYSN LYSIVESKPG FISLAWNDLP  60
LLTLSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-20168308375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.52471s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0107001e-105AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.
GenBankAY0625381e-105AY062538.1 Arabidopsis thaliana SCARECROW gene regulator (At5g66770; MUD21.1) mRNA, complete cds.
GenBankBT0025801e-105BT002580.1 Arabidopsis thaliana SCARECROW gene regulator (At5g66770) mRNA, complete cds.
GenBankCP0026881e-105CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201478.18e-40GRAS family transcription factor
SwissprotQ9FL037e-41SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A178US256e-39A0A178US25_ARATH; Uncharacterized protein
STRINGAT5G66770.13e-39(Arabidopsis thaliana)
STRINGBostr.0568s0096.1.p3e-39(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2949922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.13e-43GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]