PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.53452s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 276aa    MW: 31148.6 Da    PI: 4.5165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.53452s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.1e-2195145256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+ge
  Araha.53452s0001.1.p  95 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAMAYDLAAYKLRGE 145
                           59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-3494152No hitNo description
SMARTSM003806.4E-3795158IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2495152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-3295153IPR001471AP2/ERF domain
PROSITE profilePS5103223.53895152IPR001471AP2/ERF domain
PfamPF008475.2E-1596145IPR001471AP2/ERF domain
PRINTSPR003671.9E-1196107IPR001471AP2/ERF domain
PRINTSPR003671.9E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MATIDMFNSN TDFSDPFQEE LMKALQPYTT NTVSSSSPYS NTVFGFNQTT PLGLNQLTPY  60
QIHQIQNQIN QRRNIISPNL APKPVPMKNM ATQKLYRGVR QRHWGKWVAE IRLPKNRTRL  120
WLGTFDTAEE AAMAYDLAAY KLRGEFARLN FPQFRHEDGY YGGGSCFNPL HSSVDAKLQA  180
ICQSMGKTED VDLPCSETEL FPPKTEYQES EYGFLRSDEN SFSDESQVES SSPESGITTF  240
LDFSDSGFDE IGSFGLEKFP SVEIDWDAIS KLSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2194152160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.53452s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226050.0AL022605.3 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project).
GenBankAL1615950.0AL161595.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91.
GenBankBT0257190.0BT025719.1 Arabidopsis thaliana At4g39780 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195688.10.0Integrase-type DNA-binding superfamily protein
SwissprotO656650.0ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A178V3030.0A0A178V303_ARATH; Uncharacterized protein
STRINGAT4G39780.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-158ERF family protein