PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.53482s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 296aa    MW: 32753.2 Da    PI: 4.6623
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.53482s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.5e-16171207135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Araha.53482s0001.1.p 171 CEHCGVNEsnTPAMRRGPAGPRTLCNACGLMWANKGT 207
                           ******9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.4E-43267IPR010399Tify domain
PROSITE profilePS5132011.7593267IPR010399Tify domain
PfamPF062001.3E-83666IPR010399Tify domain
PfamPF062034.9E-1499140IPR010402CCT domain
PROSITE profilePS5101712.74999141IPR010402CCT domain
SMARTSM004012.0E-11165218IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.42165224IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-11167217No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14169212IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.87E-16170214No hitNo description
PfamPF003205.6E-14171207IPR000679Zinc finger, GATA-type
PROSITE patternPS003440171198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMNPQLLEDD DDGGGSDDLM DDDVCVAEQI GVSTRTSELT LSFEGEVYVF PAVTPHKVQT  60
VLLLLGGRDI PTAVPTLELP FENSRGVGNN PRRSNLSRRL ASLVRFREKR KERSFDKKIR  120
YNVRKEIAQR MHRKNGQFAS VREGSGGSNW ESTQSGLQDG TLQSETATRR CEHCGVNESN  180
TPAMRRGPAG PRTLCNACGL MWANKGTLRD LSKGARTLSV SQTEPETQMD IKPLYKEDSR  240
KHDEHGLQEA DEDLASYLPV EMLSASADDD YEDQEPLANL ANPSDTDFDL PSSFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.53482s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482249.11e-169PREDICTED: GATA transcription factor 24
SwissprotQ8GXL76e-69GAT24_ARATH; GATA transcription factor 24
TrEMBLB9SN001e-141B9SN00_RICCO; GATA transcription factor, putative
STRINGXP_010482249.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-64ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]