PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.54322s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 290aa MW: 32456.2 Da PI: 8.4457

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.54322s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	5.9e-09	7	55	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + rE+ RR+++N+ f eL +l + +K++Ka+iL+ +v+ +k+L Araha.54322s0002.1.p 7 KSQKAGREKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTVQLLKEL 55 5566779****************9987....69*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.268	5	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-13	5	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-13	5	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.89E-6	6	59	No hit	No description
Pfam	PF00010	9.3E-7	7	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-6	11	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTVQ LLKELTSEVN 60 KLKSEYTALT DESRELTQEK NDLREEKTSL KSEIENLNLQ YQQRLRSMSP WGAAMDHTVM 120 MAPPPSFPYP MPMAMPPGSI PMHPSMPSYT YFGNQNPSMI PAPCPTYMPY MPPNTVVEQQ 180 SVHIPQNPGN RSREPRAKVS RESRSEKAED SNEVATQLEL KTPGSTSDKD TLQRPEKTKR 240 CKRNNNNNNN NNNSVEESSH SSKCSSSPSV RDHSSSSSVA GGQKPDDAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.54322s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317507	0.0	AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11.
GenBank	AY065107	0.0	AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds.
GenBank	AY081703	0.0	AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001326099.1	1e-179	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Refseq	NP_188620.1	1e-179	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q9LT23	1e-178	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1I9LN90	1e-177	A0A1I9LN90_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRING	AT3G19860.2	1e-177	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	1e-167	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.54322s0002.1.p

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]