PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5436s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 184aa    MW: 21371.4 Da    PI: 9.4869
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5436s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.3e-1171129563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++ +rk +NRe+A+rsR++K++ +ee      +L+++N++L ++l     ++++ k+e+
  Araha.5436s0001.1.p  71 RKKKRKLSNRESAKRSREKKQKHLEEMSMQLNQLKTQNQELTNQLRYVLYHYQQTKMEN 129
                          6899**************************************99998888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.6E-1062116No hitNo description
SMARTSM003386.9E-1367131IPR004827Basic-leucine zipper domain
PfamPF077162.9E-968115IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.93269132IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-971120No hitNo description
CDDcd147024.74E-1772123No hitNo description
PROSITE patternPS0003607489IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MMSTISPVFS IEPGLLTSVP AFETGFTPWD ISHLFSVFDL SMDQIPVSAH DYGSVNQTST  60
DVSRTESTDE RKKKRKLSNR ESAKRSREKK QKHLEEMSMQ LNQLKTQNQE LTNQLRYVLY  120
HYQQTKMEND RLRMVHRILQ DKLLNIRQVL MFRQIERSSL NCSTWPCSNS TVVTVQQDPS  180
IML*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16976ERKKKRKL
27091RKKKRKLSNRESAKRSREKKQK
37176KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5436s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0853070.0AY085307.1 Arabidopsis thaliana clone 14432 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877702.11e-123basic leucine zipper 8
TrEMBLD7LSY01e-122D7LSY0_ARALL; BZIP transcription factor family protein
STRINGscaffold_501993.11e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.14e-92basic leucine-zipper 5