PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5452s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 297aa MW: 32406.6 Da PI: 6.5131

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5452s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	216	257	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Araha.5452s0001.1.p 216 AKNRRERISERLKVLQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 257 69****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.983	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-12	207	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-13	209	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.46E-12	209	261	No hit	No description
SMART	SM00353	3.8E-11	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	216	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MSHINDHCNE PNYISNPNSS EDLSSTENFG LEGRASASSS STMNSDHQQN QGCVFYPSGE 60 SIEDHNSLMD FNASSFFSFD YHRSFISPVT NGGAFSVLEE NMSYGYTGWS HHQMDSISPR 120 VIKTPNSFEK TSSFGLTSNS TSKPATNHGN GDWLYSDSTI VNTGSRHESA SPKLAGNKRP 180 FTGENTHLSK KPSSGTNGEA KPKATTSPKD PQSLAAKNRR ERISERLKVL QELVPNGTKV 240 DLVTMLEKAI GYVKFLQVQV KVLAADEFWP AQGGKAPDIS QVKEAIDAIL SSTQRDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5452s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016873	0.0	AB016873.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K22F20.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002868542.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	0.0	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	D7MII2	0.0	D7MII2_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.7__3192__AT5G37800.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	0.0	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Araha.5452s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]