PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.55258s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 176aa    MW: 20907.9 Da    PI: 8.6837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.55258s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.44.2e-37191121103
                           HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
          HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                           aFl+k+y+i++d++++++isws+++nsf+v+++e+fa  +Lp+ Fkh+nf+SFvRQLn+YgFkk+++e+         weF++++F kg
  Araha.55258s0001.1.p  19 AFLTKTYNIVDDSSTNNIISWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTER---------WEFANEYFLKG 98 
                           69****************************************************************999.........*********** PP

                           XXXXXXXXXXXXXX CS
          HSF_DNA-bind  90 kkellekikrkkse 103
                           +++ll++ikr+k++
  Araha.55258s0001.1.p  99 ERHLLKNIKRRKTS 112
                           ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.8E-5416109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.1E-3716109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.4E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3120109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEFNLPLPLE GLKETGPTAF LTKTYNIVDD SSTNNIISWS RDNNSFIVWE PETFALICLP  60
RCFKHNNFSS FVRQLNTYGF KKIDTERWEF ANEYFLKGER HLLKNIKRRK TSSQTQTQSL  120
EGDRVQLEGE IQELRRDRVA LELELVRLKR KQESVKTYLH LMEEKLKVTE VKQEMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-24411111131Heat shock factor protein 1
5d5v_B7e-24411111131Heat shock factor protein 1
5d5v_D7e-24411111131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00541DAPTransfer from AT5G43840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.55258s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4470351e-163DQ447035.1 Arabidopsis thaliana clone pENTR221-At5g43840 heat shock transcription factor family protein (At5g43840) mRNA, complete cds.
GenBankDQ6533451e-163DQ653345.1 Arabidopsis thaliana clone 0000012923_0000009316 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002863630.11e-117heat stress transcription factor A-6a
SwissprotQ1PDN31e-113HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLD7MNK41e-116D7MNK4_ARALL; AT-HSFA6A
STRINGfgenesh1_pg.C_scaffold_80004891e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-115heat shock transcription factor A6A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]