PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.55258s0001.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HSF

Protein Properties

Length: 169aa MW: 20032.9 Da PI: 8.218

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.55258s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	81.3	1.4e-25	19	105	1	103
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 aFl+k+y+i++d++++++isws+++nsf+v+++e+fa +Lp+ Fkh+nf+SF gFkk+++e+ weF++++F kg Araha.55258s0001.2.p 19 AFLTKTYNIVDDSSTNNIISWSRDNNSFIVWEPETFALICLPRCFKHNNFSSF-------GFKKIDTER---------WEFANEYFLKG 91 69************************************************9.......9*999.........******* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +++ll++ikr+k++ Araha.55258s0001.2.p 92 ERHLLKNIKRRKTS 105 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.2E-40	16	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.6E-25	16	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.22E-26	16	102	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.2E-20	20	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.1E-10	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.1E-10	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MEFNLPLPLE GLKETGPTAF LTKTYNIVDD SSTNNIISWS RDNNSFIVWE PETFALICLP 60 RCFKHNNFSS FGFKKIDTER WEFANEYFLK GERHLLKNIK RRKTSSQTQT QSLEGDRVQL 120 EGEIQELRRD RVALELELVR LKRKQESVKT YLHLMEEKLK VTEVKQEMM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-16	4	104	11	131	Heat shock factor protein 1
5d5v_B	2e-16	4	104	11	131	Heat shock factor protein 1
5d5v_D	2e-16	4	104	11	131	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	LKNIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00541	DAP	Transfer from AT5G43840	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.55258s0001.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026651	1e-84	AB026651.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD19.
GenBank	CP002688	1e-84	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ447035	1e-84	DQ447035.1 Arabidopsis thaliana clone pENTR221-At5g43840 heat shock transcription factor family protein (At5g43840) mRNA, complete cds.
GenBank	DQ653345	1e-84	DQ653345.1 Arabidopsis thaliana clone 0000012923_0000009316 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002863630.1	1e-109	heat stress transcription factor A-6a
Swissprot	Q1PDN3	1e-104	HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBL	D7MNK4	1e-107	D7MNK4_ARALL; AT-HSFA6A
STRING	fgenesh1_pg.C_scaffold_8000489	1e-108	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43840.1	1e-107	heat shock transcription factor A6A

Link Out ? help Back to Top
Phytozome	Araha.55258s0001.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]