PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5588s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 411aa    MW: 47296.3 Da    PI: 4.6801
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5588s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35641562103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Araha.5588s0001.1.p  64 FLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQK 144
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k++
  Araha.5588s0001.1.p 145 HLLKNIRRRKTS 156
                          *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.62E-3659153IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.6E-3960153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-6060153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-196487IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-3164153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-19102114IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340103127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-19115127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDPSFRFIKE EFPTGFSDSP SPPSSSSSSY LYSSSMAEAS LYDPTTLSYP QPIEGLHESG  60
PPPFLTKTYD LVEDSRTNHV VSWSKSNNSF IVWDPQAFSI TLLPRFFKHN NFSSFVRQLN  120
TYGFRKVNPD RWEFANEGFL RGQKHLLKNI RRRKTSNNSN QLQQPQSSEQ QSLDNLCIEV  180
GRYGLDGEMD SLRRDKQVLM MELVRLRQQQ QSTKMYLTLI EEKLKKTESK QKQMMSFLAR  240
AMQNPDFIQQ LVEQKEKRKE IEEAISKKRQ RPIDQGKRNV VNVGDYDDAS GYGNDAAASA  300
STFVDMSQET YGNMSEFEMS ELDKLAMHIQ GLGDHSSTRE EVLNVEKRND EEEEEDQQQG  360
YQKENKEIYG EGFWEDLLNE GQNFDFEGDQ ENVDVLIEQL GYLGSSSHTN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-265915612123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5588s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466576.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLR0G5K10.0R0G5K1_9BRAS; Uncharacterized protein
STRINGXP_010466576.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B