PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5597s0008.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GRF

Protein Properties

Length: 256aa MW: 29243.9 Da PI: 8.6679

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5597s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.1	7.2e-24	79	121	1	43
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 daepgrCrRtDGKkWRCs+++++++k+CErH+hrg++rs+++k Araha.5597s0008.1.p 79 DAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRK 121 79*************************************9987 PP
2	QLQ	58.3	2.2e-20	6	41	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l++KyLa+n+PvPp+Ll+ i++ Araha.5597s0008.1.p 6 PFTESQWEELENQALVFKYLASNVPVPPHLLFLIKR 41 8******************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.3E-14	5	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.065	6	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.3E-15	6	39	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.668	79	124	IPR014977	WRC domain
Pfam	PF08879	2.5E-19	80	121	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MATRIPFTES QWEELENQAL VFKYLASNVP VPPHLLFLIK RPFLFSSSSS SSSSRFFSPT 60 LSPHFGWNVY EMGMGRKIDA EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSSSR 120 KPLPLPPPTQ FTPNLFLDSS LSSSSVSRRR RSGYMDDFFS IEPSGSIKSC SGSAMEDNDD 180 GSCRGINIFS NEEKQPDRHC FILGTDLGTC ERPLMLEEKL KQRDDDEQER GSKRFYRFLD 240 EWPSSKSSVS TSLFI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00263	DAP	Transfer from AT2G06200	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5597s0008.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY060586	1e-174	AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.
GenBank	AY125572	1e-174	AY125572.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887234.1	1e-157	growth-regulating factor 6 isoform X2
Swissprot	Q9ZQ12	1e-141	GRF6_ARATH; Growth-regulating factor 6
TrEMBL	D7LA61	1e-151	D7LA61_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__2919__AT2G06200.1	1e-151	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14101	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G06200.1	1e-122	growth-regulating factor 6

Link Out ? help Back to Top
Phytozome	Araha.5597s0008.1.p

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]