PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5618s0017.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 81aa MW: 9096.59 Da PI: 9.1585

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5618s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.7e-11	1	43	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +E+ RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq Araha.5618s0017.1.p 1 MEQLRRERIAERMKSLQELVPNgN------KTDKASMLDEIIDYVKFLQ 43 69******************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.237	1	42	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-15	1	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.63E-10	1	47	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.5E-15	1	51	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-8	1	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-10	1	48	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MEQLRRERIA ERMKSLQELV PNGNKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAASV 60 SSQISEVIST TFPSFLQFFL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5618s0017.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493711	3e-86	AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
GenBank	AF488601	3e-86	AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018462686.1	1e-38	PREDICTED: transcription factor bHLH69-like
Swissprot	Q9ZUG9	2e-37	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1J3E7K4	3e-37	A0A1J3E7K4_NOCCA; Transcription factor bHLH69 (Fragment)
TrEMBL	A0A1J3HQ85	3e-37	A0A1J3HQ85_NOCCA; Transcription factor bHLH69 (Fragment)
TrEMBL	A0A1J3JKV4	3e-37	A0A1J3JKV4_NOCCA; Transcription factor bHLH69 (Fragment)
TrEMBL	M4D433	3e-37	M4D433_BRARP; Uncharacterized protein
STRING	Bra011237.1-P	6e-38	(Brassica rapa)
STRING	XP_006412645.1	7e-37	(Eutrema salsugineum)
STRING	XP_010438100.1	5e-37	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	6e-40	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Araha.5618s0017.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]