PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5748s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 133aa    MW: 15241.3 Da    PI: 8.6575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5748s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-05771141052
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          + RR+ri+s +e+L+el P++   p+      +iL  ++eY k
  Araha.5748s0005.1.p  77 KIRRERIRSQLETLKELTPNC---PQSD--INAILDCVIEYTK 114
                          78******************8...4333..3367777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.23267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-675118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MNNEEEFLRQ WFEMLNSLAN PEGHSDLPRI NNEGSGEDVR QKRPAESKRE GKKKRVKRQC  60
VSKSSDKSDH DTLLKKKIRR ERIRSQLETL KELTPNCPQS DINAILDCVI EYTKNLCLAV  120
LFGALHEFAG NM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14153KRPAESKREGKKK
Functional Description ? help Back to Top
Source Description
UniProtRequired during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5748s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0793746e-67AC079374.4 Arabidopsis thaliana chromosome 1 BAC F4F7 genomic sequence, complete sequence.
GenBankCP0026846e-67CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867836.11e-83transcription factor MEE8 isoform X1
SwissprotQ9FRI04e-53MEE8_ARATH; Transcription factor MEE8
TrEMBLA0A178W8711e-61A0A178W871_ARATH; MEE8
STRINGXP_010460396.17e-57(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1706168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25310.12e-55bHLH family protein