PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.57496s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 144aa    MW: 16882.3 Da    PI: 8.3831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.57496s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.61.5e-20151283127
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +GfrF+P++eel+ +yL +k+   + ++   +++  +iy   Pw+L+++ ++   e +ew++F+k+         +nr++k   Wkatg
  Araha.57496s0006.1.p  15 VGFRFNPSEEELILDYLLPKLGFYQPKTIYLLEDKdEIYAKVPWRLKHT-ENgifEPNEWFYFVKK---------TNRKVK--GWKATG 91 
                           7*********************999888666887757*********842.222457789*999986.........456545..4***** PP

                   NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                             k+vlsk +g+++g k+   fy     +ge++ W+m ey+
  Araha.57496s0006.1.p  92 GLKDVLSKkNGKVIGKKRNRSFY----VEGERSGWTMTEYS 128
                           ******9978899**********....78999********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-255139IPR003441NAC domain
PROSITE profilePS5100522.09913143IPR003441NAC domain
PfamPF023651.3E-1415128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSMVEEFYDE EEELVGFRFN PSEEELILDY LLPKLGFYQP KTIYLLEDKD EIYAKVPWRL  60
KHTENGIFEP NEWFYFVKKT NRKVKGWKAT GGLKDVLSKK NGKVIGKKRN RSFYVEGERS  120
GWTMTEYSSI GNQNQLLCHL KGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.57496s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0122461e-132AB012246.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7.
GenBankAC0516261e-132AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankBT0293191e-132BT029319.1 Arabidopsis thaliana At5g18300 mRNA, complete cds.
GenBankCP0026881e-132CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879104.11e-102NAC domain-containing protein 68
TrEMBLD7LXT71e-100D7LXT7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__1837__AT5G18300.11e-101(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.15e-78NAC domain containing protein 88