PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5777s0006.3.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 765aa    MW: 87834.1 Da    PI: 8.1488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5777s0006.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1675e-2144118189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnH+l
  Araha.5777s0006.3.p  44 DFYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDL 118
                          6***************************************876..............589***************************98 PP
2FAR167.63.1e-21204280191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnH+l 
  Araha.5777s0006.3.p 204 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLE 279
                          6***************************************9994..............799***************************97 PP

                 FAR1  91 p 91 
                          p
  Araha.5777s0006.3.p 280 P 280
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1644118IPR004330FAR1 DNA binding domain
PfamPF031011.0E-16204280IPR004330FAR1 DNA binding domain
PfamPF105512.2E-24376468IPR018289MULE transposase domain
PROSITE profilePS5096610.373650686IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-8657683IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-8661688IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MVVKAYPLGM VGIINNNGIA EDEGDSVVEP YVGLEFDTPE EARDFYNSYA TRTGFKVRTG  60
QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CPAFIRVQRR DTGKWVLDQI QKEHNHDLGG  120
HIEETTPRPS VQQRAPAPTK LGISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEESD  180
GQTQPKATEP YAGLEFSSAN EACQFYQAYA EVVGFRVRIG QLFRSKVDGS ITSRRFVCSK  240
EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHDLEP GKKNAGMKKI TEDVTGGLDS  300
VDLIELNDFS NHISKTRENT IGKEWYPVLL DYFQSKQAED MGFFYAIELD SNGSCMSIFW  360
ADSRSRFACS QFGDAVVFDT SYRKGEYSVP FATFIGFNHH RQPVLLGGAL VADESKEAFS  420
WLFQTWLRAM SGRRPRSIVA DQDLPIQQAV AQVFTGTHHR FSAWQIRSKE RENLRSFPNE  480
FKYEYEKCLY QSQTTVEFDT MWSALVNKYG LRDNMWLREI YEKRENWVPA YLRASFFGGI  540
PVNGAFDPFY GTSLNSLTSL REFISRYEQG LEQRREEERK EDFNSYNLQP FLQTKEPVEE  600
QCRRLYTLTI FRIFQSELAQ SYNYLGLKTY EEGAISRFLV RKCGNENEKH AVTFSASNLN  660
ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT KNAEFGFVRD VESGVTSQDL  720
KALMIWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5777s0006.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602700.0AF360270.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankAY1504460.0AY150446.1 Arabidopsis thaliana unknown protein (At3g06250) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889514.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_020889515.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_020889516.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLR0HJN80.0R0HJN8_9BRAS; Uncharacterized protein
STRINGBostr.2570s0035.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]