PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.57889s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21145.8 Da    PI: 10.6839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.57889s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.9e-19957149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          krie+++ r+ tf +Rrngi+KKA  L  LC++evav+++s+t+  y+y
  Araha.57889s0003.1.p  9 KRIEDSTERKATFLRRRNGIFKKADALAKLCNVEVAVLVISPTNLPYTY 57
                          79*******************************************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.067161IPR002100Transcription factor, MADS-box
CDDcd002653.21E-33277No hitNo description
SuperFamilySSF554556.02E-25288IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-191057IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRRKIEIKR IEDSTERKAT FLRRRNGIFK KADALAKLCN VEVAVLVISP TNLPYTYGNP  60
CFNDVVERIQ NPSASSKLDS LMKELEQIKE LQEVLTKRQQ RNREMSNMKG IVDLKLEDLV  120
AVKRKLEAFQ AGLKRKHVEM EDLSSPSMLS KNTKKKKTRT EFFPDRAGKC MSFGPRIPQK  180
YLK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.57889s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412411e-160AY141241.1 Arabidopsis thaliana MADS-box protein AGL102 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891383.12e-96MADS-box transcription factor 27
TrEMBLD7KBW73e-96D7KBW7_ARALL; Uncharacterized protein
STRINGscaffold_104372.15e-97(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.16e-96AGAMOUS-like 102