PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5826s0006.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 279aa MW: 32340 Da PI: 8.9862

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5826s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.8	1.6e-26	158	207	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl Araha.5826s0006.1.p 158 NSLSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSL 207 67999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.69	143	227	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-22	160	207	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MADQNPLMIW SEANNYESFL QEDIFSFLDQ SLSIDPHSSF INPFKDFQTQ TWFSFQDSIV 60 NPISTTFAAD HTFLASLDLE AISSTFSLDI MSGWWNENNG NYNNQVEPIL DDISRTNTMG 120 DPKMEKRLHE DVNTTIKEKT SQKRIIMKRR YREDGVINSL SREMMKQYFY MPITKAAKEL 180 NIGVTLLKKR CRELGIPRWP HRKLTSLNAL IANLKDLLGN TEGKTPKSKL RNALELLEME 240 KKMIEEVPDL EFGDKTKRLR QACFKAKYKQ RRLFSSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5826s0006.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-162	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	1e-162	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871493.1	0.0	protein RKD3
Swissprot	Q9FGD1	0.0	RKD3_ARATH; Protein RKD3
TrEMBL	D7KT00	0.0	D7KT00_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_2000886	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-169	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Araha.5826s0006.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]