PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5826s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 135aa    MW: 14649.2 Da    PI: 6.5006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5826s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.33.3e-07112132122
                  AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                          +++kGVr ++ +g+W AeI+dp
  Araha.5826s0009.1.p 112 KKHKGVRKKP-SGKWSAEIWDP 132
                          589****999.7*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-5113133IPR001471AP2/ERF domain
PROSITE profilePS510329.993113135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MNNFQFDPTK MDNSENVPSY DQNENLTPVA PSGPSPPSSS SSSYLTRDQE HGIMVSALRQ  60
VISNSGSDTS SSHWIAGEAL PHPDAGPCPL CGVTGCYGCA FQQGQEEIKK EKKHKGVRKK  120
PSGKWSAEIW DPSLR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5826s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871491.12e-73putative ethylene-responsive transcription factor ERF121
SwissprotQ38Q406e-58EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLD7MKU57e-65D7MKU5_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80026451e-65(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.11e-45ERF family protein