PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5836s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 164aa    MW: 17798 Da    PI: 10.3822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5836s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-2071128155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIr+ +  +g   r +r++lg+f taeeAa a+++a+ +l g
  Araha.5836s0002.1.p  71 KKFRGVRQRP-WGKWAAEIRCGRAhGGgkGRpQRVWLGTFETAEEAALAYDNAAIQLIG 128
                          59********.**********77755575449**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.1E-351160IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000188.68E-2571136No hitNo description
PfamPF008474.3E-1472128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2772136IPR001471AP2/ERF domain
SMARTSM003803.2E-3072142IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1972136IPR016177DNA-binding domain
PROSITE profilePS5103221.49672136IPR001471AP2/ERF domain
PRINTSPR003671.2E-117384IPR001471AP2/ERF domain
PRINTSPR003671.2E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MKRIVRISFT DTEATDSSSS EDESPPSRHR GKKLVKEIVI DPSDPPEVGK TRFKIRIPAR  60
YLAPKTTTNK KKFRGVRQRP WGKWAAEIRC GRAHGGGKGR PQRVWLGTFE TAEEAALAYD  120
NAAIQLIGPD APTNFRRPDV DSPVVKQDSD AGGGASAASG EDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18721351471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5836s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0870641e-150AY087064.1 Arabidopsis thaliana clone 31252 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866096.11e-100ethylene-responsive transcription factor ERF069
SwissprotQ8W4I57e-79ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLD7KML63e-90D7KML6_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.1__2503__AT1G22985.14e-91(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.13e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]