PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5843s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 217aa    MW: 24772.6 Da    PI: 7.087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5843s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Araha.5843s0003.1.p 20 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 67
                         79********************************************97 PP
2Myb_DNA-binding52.98.8e-1773116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++++ ++++++G++ W++Ia++++ gRt++++k++w++
  Araha.5843s0003.1.p  73 RGNITAEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 116
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-231570IPR009057Homeodomain-like
PROSITE profilePS5129415.8641567IPR017930Myb domain
SuperFamilySSF466898.61E-3018114IPR009057Homeodomain-like
SMARTSM007178.1E-131969IPR001005SANT/Myb domain
PfamPF002491.6E-162067IPR001005SANT/Myb domain
CDDcd001674.67E-102267No hitNo description
PROSITE profilePS5129424.09268122IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2471121IPR009057Homeodomain-like
SMARTSM007171.0E-1472120IPR001005SANT/Myb domain
PfamPF002492.8E-1573116IPR001005SANT/Myb domain
CDDcd001672.08E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEKRESSGGS GSGDHAEVRK GPWTMEEDLI LINYIANHGE GVWNSLAKSA GLKRTGKSCR  60
LRWLNYLRPD VRRGNITAEE QLIIMELHAK WGNRWSKIAK HLPGRTDNEI KNFWRTKIQK  120
YIIKNGETTT VGSQSSEFIN HHATSTSHVL NDTQETMDMY SPTMSYQHAN NINHHLSYGN  180
YVPESDSTMM PLSVDQSEQN YWSVDDLWPM NLYNGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261712224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5843s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759870.0AF175987.1 Arabidopsis thaliana putative transcription factor (MYB24) mRNA, complete cds.
GenBankAY5196320.0AY519632.1 Arabidopsis thaliana MYB transcription factor (At5g40350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872058.11e-152transcription factor MYB24
SwissprotQ9SPG91e-141MYB24_ARATH; Transcription factor MYB24
TrEMBLR0H5581e-128R0H558_9BRAS; Uncharacterized protein
STRINGBostr.7200s0008.1.p1e-145(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.11e-144myb domain protein 24
Publications ? help Back to Top
  1. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]