PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5892s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 210aa    MW: 24120.9 Da    PI: 3.9771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5892s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.11.4e-22101211115
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lp G+rF+P+d e+ v++L +k+ g ++++ ++ +e+ di++++P+dLp  + +ee++wyf++++ k++ t +++        W  tg++
  Araha.5892s0003.1.p  10 LPIGMRFRPSDLEMAVYFLINKALGLTMKARTIPEEChDIFSIHPRDLP-GYGSEEEHWYFYCQKLKNQVTTTKSY-----NLWIPTGEE 93 
                          699***************************77777779***********.6677899*******998776533333.....37******* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapk 115
                          ++vl+   ++elvg+k++++f ++++++
  Araha.5892s0003.1.p  94 TDVLDPkkNDELVGIKRSFAFIENEEEE 121
                          ****98667778**********655444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-275167IPR003441NAC domain
PROSITE profilePS5100527.39210167IPR003441NAC domain
PfamPF023651.6E-911147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGPTYRDMPL PIGMRFRPSD LEMAVYFLIN KALGLTMKAR TIPEECHDIF SIHPRDLPGY  60
GSEEEHWYFY CQKLKNQVTT TKSYNLWIPT GEETDVLDPK KNDELVGIKR SFAFIENEEE  120
EEASDYNNNG LSDEEEKPPQ YNWFLDEISL PLTVLDTDWV LCHIFNEKVK PEFVNLLPTI  180
VESESESDPS DVDDEEEDET VLPPPPASP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5892s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870653.11e-115NAC domain-containing protein 41
TrEMBLD7MIZ31e-114D7MIZ3_ARALL; Predicted protein
STRINGAl_scaffold_0007_35411e-114(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.12e-89NAC domain containing protein 95