PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5904s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 189aa    MW: 21444.9 Da    PI: 6.2771
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5904s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.2e-1057103551
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                           + +r   NReA r++R++Kka+++ Le++vk L++ N++L  +l++
  Araha.5904s0004.1.p  57 SNKKRSCGNREAVRKYREKKKARTAYLEDEVKRLQSLNEQLLRKLQS 103
                          67899999*********************************988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-1149120No hitNo description
SMARTSM003382.3E-752120IPR004827Basic-leucine zipper domain
PfamPF077168.0E-1753105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.2255121IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-756104No hitNo description
CDDcd146869.31E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDDEEGKDQD RVTRGCSHTH SCNPPGPEDA FHSHTCFHAH THLIIPDQQE NDHSDSSNKK  60
RSCGNREAVR KYREKKKART AYLEDEVKRL QSLNEQLLRK LQSQEMVETE LIRLRTLLVE  120
MQGKIDVELC GFSFQKQCNG SGFVFKEDGC SVATSNMMCE AARVECEEGQ TLHDPIHSFV  180
PQSPPFSH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5904s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1176290.0AK117629.1 Arabidopsis thaliana At3g51960 mRNA for putative bZip transcription factor Atbzip24, complete cds, clone: RAFL17-28-M01.
GenBankBT0054220.0BT005422.1 Arabidopsis thaliana clone U50385 putative bZIP family transcription factor (At3g51960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882554.11e-137basic leucine zipper 24
RefseqXP_020882555.11e-137basic leucine zipper 24
RefseqXP_020882556.11e-137basic leucine zipper 24
RefseqXP_020882557.11e-137basic leucine zipper 24
RefseqXP_020882558.11e-137basic leucine zipper 24
SwissprotQ8GTS11e-126BZP24_ARATH; Basic leucine zipper 24
TrEMBLD7LU061e-135D7LU06_ARALL; BZIP family transcription factor (Fragment)
STRINGfgenesh2_kg.5__1547__AT3G51960.21e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151721518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.11e-128basic leucine zipper 24