PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6003s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WOX
Protein Properties Length: 276aa    MW: 31542.8 Da    PI: 6.626
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6003s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.86.7e-2259117356
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                          +R+++t+eq+++Leel+++ +r+p++e+++++A+kl    +++ ++V++WFqN++a+e+
  Araha.6003s0010.1.p  59 SRWNPTPEQITTLEELYRSgTRTPTTEQIQQIASKLrkygRIEGKNVFYWFQNHKARER 117
                          7*****************99*************************************98 PP
2Wus_type_Homeobox114.74.4e-3757119264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          a++RW+PtpeQi+ Leely+sG+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+kaRer k
  Araha.6003s0010.1.p  57 ATSRWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLK 119
                          689**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.45154119IPR001356Homeobox domain
SMARTSM003894.5E-656123IPR001356Homeobox domain
SuperFamilySSF466892.01E-1258118IPR009057Homeodomain-like
PfamPF000461.4E-1959117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-959117IPR009057Homeodomain-like
CDDcd000864.29E-660117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0016049Biological Processcell growth
GO:0048314Biological Processembryo sac morphogenesis
GO:0048446Biological Processpetal morphogenesis
GO:0048482Biological Processplant ovule morphogenesis
GO:0051301Biological Processcell division
GO:0048353Cellular Componentprimary endosperm nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGYISNNNLI NYLPLSTTQP PLLLPHCDIN GNDHHQLITA SSGELDDDRK NDIPATATSR  60
WNPTPEQITT LEELYRSGTR TPTTEQIQQI ASKLRKYGRI EGKNVFYWFQ NHKARERLKR  120
RRCEGGALNK PHKDVKDSSS GGYRVDQTKS CPSLPHTNPQ PQHELDPASN NKDNNANNED  180
RGTTETSERV SEVGKEATWR NLVTWSITQD QEPGEINFNQ NVNGGEEEET REIRTLNLFP  240
VMEKQEKPGR FTDKAKVNQV CCNYCYYYEF MPLKN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6003s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0858320.0AY085832.1 Arabidopsis thaliana clone 18820 mRNA, complete sequence.
GenBankAY2513990.0AY251399.2 Arabidopsis thaliana WOX6 protein mRNA, complete cds.
GenBankAY8852220.0AY885222.1 Arabidopsis thaliana pretty few seeds 2 (PFS2) mRNA, complete cds.
GenBankDQ4464510.0DQ446451.1 Arabidopsis thaliana clone pENTR221-At2g01500 homeobox-leucine zipper transcription factor family protein (At2g01500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880920.11e-179WUSCHEL-related homeobox 6
SwissprotQ9ZVF51e-156WOX6_ARATH; WUSCHEL-related homeobox 6
TrEMBLD7LLR91e-178D7LLR9_ARALL; HOS9/PFS2
STRINGfgenesh2_kg.5__60__AT2G01500.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-120WOX family protein