PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6022s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 275aa    MW: 30927.6 Da    PI: 5.5217
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6022s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_158.21.7e-18190251263
                          XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le+eN++L ke+ee +ke +k  +ev
  Araha.6022s0006.1.p 190 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEV 251
                          5789***************************************************9988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-14188244No hitNo description
SMARTSM003381.3E-14189253IPR004827Basic-leucine zipper domain
PfamPF001701.1E-17190251IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.277191243IPR004827Basic-leucine zipper domain
CDDcd147071.48E-18193239No hitNo description
SuperFamilySSF579591.44E-10193245No hitNo description
PROSITE patternPS000360196211IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MASFKLMSSS NSDLSRRNSS SASSSPSIRS SHHLRPNPVA DHSRISFAYG GGNDYTFASD  60
SKPFEMAIDV DRSIGDRNSV NNGKSVDDVW KEIVSGEQKT IMMKEEEQED IMTLEDFLAK  120
AAMDDGGSDE IDVKIPPERL NNDGSYTFDF PMMSQPQRHS SFEMIEGSMG GGGTMRGKRG  180
RVMMEAMDKA AAQRQKRMIK NRESAARSRE RKQAYQVELE TLAAKLEEEN EQLLKEIEES  240
TKERYKKLME VLIPVDEKPR PPSRSLSRSH SLEW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6022s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030270.0AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAY0876030.0AY087603.1 Arabidopsis thaliana clone 36980 mRNA, complete sequence.
GenBankBT0244950.0BT024495.1 Arabidopsis thaliana At1g03970 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU018230.0U01823.1 Arabidopsis thaliana Columbia bZIP protein GBF4 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171893.11e-170G-box binding factor 4
SwissprotP427771e-171GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A384LG291e-169A0A384LG29_ARATH; GBF4
TrEMBLQ2HIT61e-169Q2HIT6_ARATH; At1g03970
STRINGAT1G03970.11e-170(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-119G-box binding factor 4