PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.60507s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 186aa    MW: 20129.8 Da    PI: 5.1332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.60507s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-192171256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                          +y+GVr+++ +gr++AeIrdp     + kr++lg+f t eeAa+a++ a+++++g+
  Araha.60507s0005.1.p 21 RYRGVRRRP-WGRYAAEIRDPI----KkKRVWLGSFNTGEEAARAYDSAAREFHGA 71
                          69*******.**********72....35*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-222179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-302178IPR001471AP2/ERF domain
CDDcd000181.00E-312178No hitNo description
PROSITE profilePS5103223.9072178IPR001471AP2/ERF domain
PfamPF008472.0E-132170IPR001471AP2/ERF domain
SMARTSM003803.7E-352184IPR001471AP2/ERF domain
PRINTSPR003673.2E-102233IPR001471AP2/ERF domain
PRINTSPR003673.2E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MATKKKKVTK AVAVGKSKEL RYRGVRRRPW GRYAAEIRDP IKKKRVWLGS FNTGEEAARA  60
YDSAAREFHG AKAKTNFPLL GKDGNASVTP VNNALSETAC DGTLPLDCQN LLSPGVAEAV  120
AGFFLDPSDA TALKEELDRV CPDQFESIDM GLSIGPQTAV EEPDTFSAVD CELKMEPDLD  180
LNLDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1921781472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12544RRRPWGRYAAEIRDPIKKKR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00124DAPTransfer from AT1G03800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.60507s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0476491e-104AB047649.1 Arabidopsis thaliana AtERF10 gene for ERF domain protein 10, complete cds.
GenBankAC0030271e-104AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAY5608791e-104AY560879.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g03800) mRNA, complete cds.
GenBankBT0290201e-104BT029020.1 Arabidopsis thaliana At1g03800 mRNA, complete cds.
GenBankCP0026841e-104CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892180.11e-109ethylene-responsive transcription factor 10
SwissprotQ9ZWA23e-99ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLD7KD811e-108D7KD81_ARALL; Uncharacterized protein
STRINGscaffold_100331.11e-109(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.13e-83ERF domain protein 10
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]