PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.60889s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family EIL
Protein Properties Length: 566aa    MW: 63986.5 Da    PI: 5.263
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.60889s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3433.61.8e-132384011351
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 
                           e+l++rmwkd+++lkr+ker+k     + a   +++ +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd
  Araha.60889s0001.1.p  38 EDLERRMWKDRVRLKRIKERQKVGS--QGA-QTKETPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSD 123
                           89*****************999754..444.5677899*************************************************** PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS
                  EIN3  90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178
                           ++raWWkekv+fd+ngpaai+ky+ ++l++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWPtG+e
  Araha.60889s0001.1.p 124 NIRAWWKEKVKFDKNGPAAIAKYEEECLAFGKSDGN----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNE 208
                           ******************************987777....77999******************************************** PP

                           HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX CS
                  EIN3 179 lwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss 265
                           +ww +lgl+k+q+ ppy+kphdlkk+wkv+vLtavi+hm p+i++i++++rqsk+lqdkm+akes+++l+vlnqee+++++ s++  +s
  Araha.60889s0001.1.p 209 EWWVKLGLPKSQS-PPYRKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQPSSDngNS 296
                           *************.9**********************************************************************6522 PP

                           ........XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX..................XXXXXXXXXXXXXXXXXXXXX..... CS
                  EIN3 266 ........slrkqspkvtlsceqkedvegkkeskikhvqavktta..................gfpvvrkrkkkpsesakvsskevsrt 328
                                     + +++k ++++++++dv+g+++ + + ++++++++                  +++ +r+rk+++ +       + + +
  Araha.60889s0001.1.p 297 nvteahrrGNNADRRKPVINSDSDYDVDGTEDASGSVSSKDSRRNqtqkeqptaishivrdqdKAEKHRRRKRPRIR-------SGTNN 378
                           67876544333378889999999*****6666666666666665566777777787666543333333333322222.......22355 PP

                           .XXXXXXX.XXXXXXXXXXXXXX CS
                  EIN3 329 cqssqfrgsetelifadknsisq 351
                            q+++ ++ e+++i++d+n++++
  Araha.60889s0001.1.p 379 RQEEEQPEAEQRNILPDMNHVDD 401
                           67778888999*******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.2E-12638283No hitNo description
Gene3DG3DSA:1.10.3180.107.6E-71159291IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.27E-60164286IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MGDLAGSVAD IRMENEPDDL ASDNVAEIDV SDEEIDAEDL ERRMWKDRVR LKRIKERQKV  60
GSQGAQTKET PKKISDQAQR KKMSRAQDGI LKYMLKLMEV CKVRGFVYGI IPEKGKPVSG  120
SSDNIRAWWK EKVKFDKNGP AAIAKYEEEC LAFGKSDGNR NSQFVLQDLQ DATLGSLLSS  180
LMQHCDPPQR KYPLEKGTPP PWWPTGNEEW WVKLGLPKSQ SPPYRKPHDL KKMWKVGVLT  240
AVINHMLPDI AKIKRHVRQS KCLQDKMTAK ESAIWLAVLN QEESLIQQPS SDNGNSNVTE  300
AHRRGNNADR RKPVINSDSD YDVDGTEDAS GSVSSKDSRR NQTQKEQPTA ISHIVRDQDK  360
AEKHRRRKRP RIRSGTNNRQ EEEQPEAEQR NILPDMNHVD DPLLEYNING THHEEDVVDP  420
NIALGPEENG LELVVPEFHN NYTYLPPVNR QDMMPVDERP MLYGPNPNHE LQFGSGYNFY  480
NPSAVFVHNQ EDDILHTQIE MNAQAPPHNS GFEAPGGVLQ PLGLLGNEDG LAGSELPPEY  540
PSDIMSPFND LSFDYGIDDF SWFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A5e-871632949140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.60889s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0042150.0AF004215.1 Arabidopsis thaliana ethylene-insensitive3-like3 (EIL3) mRNA, complete cds.
GenBankAY0700440.0AY070044.1 Arabidopsis thaliana putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds.
GenBankAY1338390.0AY133839.1 Arabidopsis thaliana clone U18784 putative ethylene-insensitive protein EIL3 (At1g73730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888943.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLD7KRL60.0D7KRL6_ARALL; Uncharacterized protein
STRINGscaffold_202309.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]