PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6094s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 616aa    MW: 67108.3 Da    PI: 5.4169
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6094s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31273330260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Araha.6094s0001.1.p 273 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 330
                          8****************************************.***************85 PP
2WRKY100.41.1e-31478536159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct ++C+v+k+ver+++d k v++tYeg+H h+
  Araha.6094s0001.1.p 478 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPRCTVRKHVERASHDLKSVITTYEGKHIHD 536
                          59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-28265331IPR003657WRKY domain
SuperFamilySSF1182903.27E-25270331IPR003657WRKY domain
SMARTSM007741.6E-34272330IPR003657WRKY domain
PfamPF031065.1E-24273328IPR003657WRKY domain
PROSITE profilePS5081123.25273331IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-35463538IPR003657WRKY domain
SuperFamilySSF1182902.75E-27470538IPR003657WRKY domain
PROSITE profilePS5081136.185473538IPR003657WRKY domain
SMARTSM007744.6E-35478537IPR003657WRKY domain
PfamPF031061.9E-23479535IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDSTGN  60
HNKDSSQTNV FRGGLSERIA ARAGFNAPRL NTENIRSNTD FTIDSSLRSP CLTISSPGLS  120
PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSDK AKDEFFDDIG ASFTFHPVSR  180
SSSSFFQGTT EMMSVDYGNY NNRSSSHQSA EDVKLGSQNI ESSNLYGIES DNQNGQNKTS  240
DVTTNASLET VDHQEEEEEQ RRGDSMVGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN  300
PNCQVKKKVE RSREGHITEI IYKGAHNHSK PPPNRRSGMQ VDGTEQVEQQ QQRDSAATWV  360
SCNNTQQQGG SNENNVEEGS TGFEYGNQSG SIQAQNGGQY ESGDAVVVVD ASSTFSNDED  420
EDDRGTHGSV SMGYDGEGDE SESKRRKLEA YAAEMSGATR AVREPRVVVQ TTSDVDILDD  480
GYRWRKYGQK VVKGNPNPRS YYKCTAPRCT VRKHVERASH DLKSVITTYE GKHIHDVPAA  540
RNSSHGGGQA GLANLSMPGL AYGQGKMPGL PHPYLTQPVG MSEAMMQRGM EPKVEPVSDS  600
GQSVYNQIMS RLPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-35273539878Probable WRKY transcription factor 4
2lex_A5e-35273539878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6094s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4183080.0AF418308.1 Arabidopsis thaliana WRKY transcription factor 2 (WRKY2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864443.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLD7ML960.0D7ML96_ARALL; Uncharacterized protein
STRINGscaffold_802171.10.0(Arabidopsis lyrata)
STRINGBostr.26833s0636.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]