PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.6153s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 290aa MW: 33345.6 Da PI: 4.7724

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.6153s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.6e-07	167	211	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq Araha.6153s0001.1.p 167 SIAARERRRRIAEKTHELGKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 211 567899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-10	159	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.697	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-10	164	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-5	167	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-9	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.76E-4	183	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDCLSYFFNY DPPVQLQDCF IPEMDMIIPE TDSFFFQSQP PLEFHQPLFQ EETPSQAHFD 60 PFCDQFLSPQ DIFLPNPKTE IFNETHDLDF LLPTPKRQKL VNSSYHCNTH HHFQSHNPNF 120 FDPFGDIDFV PEASTFPEFR VPDFSLAFTV GRGDQDDTKK PTLSSQSIAA RERRRRIAEK 180 THELGKLIPG GQKLNTAEMF QAAAKYVKFL QSQVGVLQLM QTTKKGSSNV QMETRFLLES 240 QAIQEKLSTE EVCLVPCEMV QDLTTEETIW RNPNISREIN KLLAKDLAN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.6153s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY234412	0.0	AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002879517.1	0.0	transcription factor bHLH53
Swissprot	Q84RD0	0.0	BH053_ARATH; Transcription factor bHLH53
TrEMBL	D7LH48	0.0	D7LH48_ARALL; Predicted protein
STRING	Al_scaffold_0004_1965	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.6153s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]