PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6161s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 163aa    MW: 18973.5 Da    PI: 7.5501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6161s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.73.4e-30131453128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka..eekewyfFskrdkkya..tgkrknra....tksgyW 83 
                           GfrFhP+d+el+ +yL +kv++++++++e  +++diy  ePw+L  +++ +  e +ew++F+k  + ++  tgkr +r+    t +g W
  Araha.6161s0007.1.p  13 IGFRFHPSDQELILRYLGPKVAKRSNKEFELDDKTDIYAKEPWRLThTET-NffEPNEWFYFVKLTQLSEnvTGKRMSRKvkgeTCDGCW 101
                          6************************9999988889**********83333.245778*****9988866634799999974555669*** PP

                  NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          k +gk ++++ + +ge++g k++L fy + +  ++ + W+m ey l
  Araha.6161s0007.1.p 102 KPSGKLRDIVLEdTGEVIGKKRSLSFYVKGE--SNASGWTMTEYYL 145
                          ********999878899**********4433..3579*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-3210159IPR003441NAC domain
PROSITE profilePS5100534.03611162IPR003441NAC domain
PfamPF023654.5E-1813144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSMVKYYDKE EHIGFRFHPS DQELILRYLG PKVAKRSNKE FELDDKTDIY AKEPWRLTHT  60
ETNFFEPNEW FYFVKLTQLS ENVTGKRMSR KVKGETCDGC WKPSGKLRDI VLEDTGEVIG  120
KKRSLSFYVK GESNASGWTM TEYYLQDGGL FHDQVLCHLK GP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6161s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154731e-160AB015473.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCM23.
GenBankCP0026881e-160CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877802.11e-113protein CUP-SHAPED COTYLEDON 1
TrEMBLR0HBL04e-82R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006289517.16e-83(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.14e-47NAC domain containing protein 88